Section: Dissemination

Teaching - Supervision - Juries

Teaching

• Four team members are faculty (Guillaume Beslon, Carole Knibbe, Christophe Rigotti and Jonathan Rouzaud-Cornabas). They teach 192h/year each in INSA-Lyon and University Claude Bernard Lyon 1 in the computer science departments and bioinformatics departments.

• All our PhD students who wish it benefit from “teaching contracts”. They teach 64h/year at INSA-Lyon, mainly in the undergraduate school and in the bioinformatics department.

• Eric Tannier teaches approximately 60h/year in Master programs at INSA-Lyon and University Claude Bernard Lyon 1.

• Licence:

  • C. Knibbe, Fundamentals of algorithmics and programming, 56 heqTD, L3, Bioinformatics and Modelling program of INSA-Lyon

  • C. Knibbe, Fundamentals of databases, 27 heqTD, L3, Bioinformatics and Modelling program of INSA-Lyon

  • C. Knibbe, Architecture of computer systems, 10 heqTD, L3, Bioinformatics and Modelling program of INSA-Lyon

  • C. Knibbe, Software development, 24 heqTD, L3, Bioinformatics and Modelling program of INSA-Lyon

  • J. Rouzaud-Cornabas, Object-Oriented Programming, 57h, L3, Computer Science Dept, INSA Lyon, France

• Master :

  • A. Denizot, Enzymology, Cell biology, Neuroscience, 64h, M1 and M2, INSA Lyon, France

  • M. Fernandez, Biostatistiques, 20h, M1, Université Jean Monnet, Saint-Etienne, France; Méthode en informatique appliqué à la biologie, 17h, M2, Université Jean Monnet, Saint-Etienne, France

  • C. Knibbe, Careers in bioinformatics and modelling, 35 heqTD, M1, Bioinformatics and Modelling program of INSA-Lyon

  • J. Rouzaud-Cornabas, Human Machine Interface, 42h, M1, Computer Science Dept, INSA Lyon, France

  • J. Rouzaud-Cornabas, Systems, 14h, M1, Computer Science Dept, INSA Lyon, France

  • J. Rouzaud-Cornabas, Parallel Computing, 93h, M2, Computer Science Dept, INSA Lyon

  • J. Rouzaud-Cornabas, Computational Sciences, 10h, M2, Computer Science Dept, INSA Lyon

  • J. Rouzaud-Cornabas, Parallel Computing, 8h, M2, BioSciences Dept, INSA Lyon

  • E. Tannier, Computational Biology, 24h, M1, Insa Lyon and Université de Lyon, France

• Doctorat : E. Tannier, BMIC, 2h Université de Lyon, France

• E-learning

  • Eric Tannier produced a 14mn MOOC on Ethics in science, for the Doctoral school of University of Lyon, France.

• Faculty functions

  • Since Sept 2017, Carole Knibbe is the Head of the Bioinformatics and Modeling master program of INSA-Lyon

Supervision

• PhD :

  • Yoann Anselmetti, co-supervised by E. Tannier, Univ Montpellier, defense November 29, 2017

  • Wandrille Duchemin,co-supervised by E. Tannier, Univ Lyon 1, defense December 4, 2017

  • Damic Hasic, co-supervised by E. Tannier, Univ Sarajevo, defense Juy 13, 2017

  • Alvaro Mateos Gonzalez, Asymptotic analysis of partial differential equations arising in biological processes of anomalous diffusion, co-supervised by H. Berry, T. Lepoutre (Inria Dracula) and V. Calvez (Inria Numed), defense 22 September 2017

  • Charles Rocabert, Étude de l'évolution des micro-organismes bactériens par des approches de modélisation et de simulation informatique, co-supervised by G. Beslon and C. Knibbe, defense 17 November 2017

  • Sergio Peignier, Subspace Clustering on Static Datasets and Dynamic Data Streams Using Bio-Inspired Algorithms, co-supervised by C. Rigotti and G. Beslon, defense 27 July 2017

• PhD in progress :

  • Audrey Denizot, Simulation of calcium signaling in fine astrocytic processes, started Sept 2016, supervised by H. Berry

  • Marie Fernandez, Extraction and analysis of the acoustic network of social birds: tools for population tracking, started Sept 2016, co-supervised by H. Berry, H. Soula (UPMC, Paris) and C. Vignal (UPMC, Paris)

  • Alexandre Foncelle, Modeling the signaling pathway implicated in STDP: the role of endocannabinoid and dopamine signaling, started Sept 2014, supervised by H. Berry

  • Vincent Liard, Towards a quantitative digital genetics platform, INSA-Lyon, started Oct 2016, co-supervision: G Beslon, J Rouzaud-Cornabas, C Ofria (Michigan State University, BEACON Center)

Juries

HDR juries

• H. Berry: Dominique Martinez, Univ. de Lorraine, Nancy, March 2017 (reviewer)

• C. Rigotti: François Rioult, Univ. Caen Normandie, Caen, December 2017 (examiner).

PhD juries

• H. Berry :

  • Alexandre Mendes, Univ. P & M Curie, Paris, Sep 2017 (examiner)

  • llyas Djafer-Cherif, Univ. Paris-Saclay, Paris, July 2017 (reviewer)

  • Martin Potier, Univ. Paris-Est, Creteil, July 2017 (examiner)

• G. Beslon :

  • Roman Goulard, Univ. Aix-Marseille, Marseille, November 2017 (reviewer)

  • Andrei Kucharavy, Univ. P & M Curie, Paris, December 2017 (examiner)

Search committees

• H. Berry served in the following search pannels: assistant professor (INSA Lyon, France), full professor (UPMC, Paris, France), junior researcher (CR2 Inria, Rennes), senior researcher (DR2 Inria, Paris).